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Jan29CBC Workshop: Virtual Variant DetectionALL DAY
Day 1: Self-guided introduction to Linux and HPC (available 2 weeks ahead of workshop)
Day 2: Introduction to HTS, variant calling basics. Reference alignment and QC.
Day 3: Introduction to variant calling models and common pipelines (GATK, Freebayes, BCFtools).
Day 4: Filtering and comparing variant call sets. Annotating variant call sets. Parallelizing large variant calling runs.
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Jan29
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Jan29
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Jan29